Hi Cody, I found a simple workaround to get stereo working in batch mode. Just set the "stereo" setting to 1 after switching to anaglyph, like this:
stereo anaglyph set stereo Cheers, Thomas > On Apr 24, 2018, at 8:29 AM, Thomas Holder <thomas.hol...@schrodinger.com> > wrote: > > Thanks Jared and Cody! There is not much I can add, yes this looks like a bug > and we should fix it. > > Cheers, > Thomas > >> On Apr 23, 2018, at 11:51 PM, Jared Sampson <jared.samp...@columbia.edu> >> wrote: >> >> Hi Cody - >> >> I can confirm that I see similar behavior on 2.1.0 (stereo rendered properly >> from the GUI but not in batch mode) but the issue is not limited to just >> anaglyph stereo. Rather, (admittedly not having tested all stereo_mode >> options) it seems stereo in general doesn't get rendered as expected in >> batch mode. I imagine Thomas will chime in as well, but I would file a bug >> report with pymol-dev-gr...@schrodinger.com and/or via >> https://sourceforge.net/p/pymol/bugs/. >> >> Cheers, >> Jared >> >> On April 23, 2018 at 6:59:03 PM, Cody Jackson (cjack...@scripps.edu) wrote: >> >>> Hi Everyone, >>> >>> I'm trying to make anaglyph 3D figures and movies in command line mode and >>> I'm having some trouble - using incentive version 2.1.1 right now. >>> >>> It seems like anaglyph stereo is only ray traced when the GUI is open. >>> Here's a quick example adapted from the wiki, it saves the desired red-cyan >>> png when I run it with @script.pml in the GUI, but I only get the 2D output >>> when I run pymol -c script.pml. Is there a trick to getting stereo images >>> in the command line/batch mode? Is it not possible? >>> >>> -- >>> fetch 1ESR, async=0 >>> as cartoon >>> set cartoon_smooth_loops >>> spectrum >>> bg white >>> stereo anaglyph >>> ray 640,480 >>> png demo.png >>> -- >>> >>> Thank you for any input. >>> >>> Best, >>> Cody Jackson -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
