Hi Cody -
I can confirm that I see similar behavior on 2.1.0 (stereo rendered properly
from the GUI but not in batch mode) but the issue is not limited to just
anaglyph stereo. Rather, (admittedly not having tested all stereo_mode
options) it seems stereo in general doesn't get rendered as expected in batch
mode. I imagine Thomas will chime in as well, but I would file a bug report
with pymol-dev-gr...@schrodinger.com and/or via
https://sourceforge.net/p/pymol/bugs/.
Cheers,
Jared
On April 23, 2018 at 6:59:03 PM, Cody Jackson (cjack...@scripps.edu) wrote:
Hi Everyone,
I'm trying to make anaglyph 3D figures and movies in command line mode and I'm
having some trouble - using incentive version 2.1.1 right now.
It seems like anaglyph stereo is only ray traced when the GUI is open. Here's a
quick example adapted from the wiki, it saves the desired red-cyan png when I
run it with @script.pml in the GUI, but I only get the 2D output when I run
pymol -c script.pml. Is there a trick to getting stereo images in the command
line/batch mode? Is it not possible?
--
fetch 1ESR, async=0
as cartoon
set cartoon_smooth_loops
spectrum
bg white
stereo anaglyph
ray 640,480
png demo.png
--
Thank you for any input.
Best,
Cody Jackson
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