Hi Amin,
It worked. Many Thanks
Cheers
Mohsen
From: a...@imtech.res.in [mailto:a...@imtech.res.in]
Sent: Thursday, 25 February 2016 10:24 PM
To: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Alignment of two proteins
Hi. I think
align 4mt1 & chain A, 3aob & chain B
should work.
Amin.
On 2016-02-25 17:02, Mohsen Chitsaz wrote:
Hi Julian,
I have two homotrimer proteins, i.e. 3aob and 4mt1. I want to align chain A of
4mt1 to chain B of 3aob. How to tell Pymol to align a specific chain or part of
a protein, in my case chain A of 4mt1, to a specific chain or part of another
protein, in my case chain B of 3aob?
Cheers
Mohsen
From: Mohsen Chitsaz
Sent: Wednesday, 24 February 2016 11:17 PM
To: 'Julian Heinrich' <jul...@joules.de<mailto:jul...@joules.de>>
Cc: pymol-users@lists.sourceforge.net<mailto:pymol-users@lists.sourceforge.net>
Subject: RE: [PyMOL] Appending a pdb file
Hi Julian,
Many Thanks for your help. It worked.
Cheers
Mohsen
From: julian.heinr...@gmail.com<mailto:julian.heinr...@gmail.com>
[mailto:julian.heinr...@gmail.com] On Behalf Of Julian Heinrich
Sent: Monday, 22 February 2016 8:24 PM
To: Mohsen Chitsaz
<mohsen.chit...@flinders.edu.au<mailto:mohsen.chit...@flinders.edu.au>>
Cc: pymol-users@lists.sourceforge.net<mailto:pymol-users@lists.sourceforge.net>
Subject: Re: [PyMOL] Appending a pdb file
Hi Mohsen,
if you want to superimpose structures, have a look at the align command:
http://pymolwiki.org/index.php/Align
Cheers,
Julian
On Thu, Feb 18, 2016 at 10:47 PM, Mohsen Chitsaz
<mohsen.chit...@flinders.edu.au<mailto:mohsen.chit...@flinders.edu.au>> wrote:
Hi
In order to superimpose two protein sequences, I am trying to append a pdb file
to an existing protein sequence, which I have already opened in PyMol. The
append function is not working in my PyMol. Could someone help me with this
please.
Cheers
Mohsen
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