Hi Takanori, Thanks for joining the conversation. I have been talking with Albert (off-list) and as you wrote the problem seems to be related with the way PyMOL save the session in the newer versions.
To export a pse file to an older PyMOl version you should do: set pse_export_version, 1.72 save your_session.pse where 1.72 is the PyMOL version 1.7.2 (you can set to other versions as well) Cheers, Osvaldo. On Sun, Oct 18, 2015 at 9:48 AM, Takanori Nakane < takanori.nak...@bs.s.u-tokyo.ac.jp> wrote: Hi, > > It looks like the structure of PyMOL session (what > we got from cmd.get_session) has changed in recent upgrades. > I have to rewrite the program. > > Does anyone know if there is a setting to export in the 'old' format? > > Best regards, > > Takanori Nakane > > On 2015/10/18 1:47, Osvaldo Martin wrote: > > That really weird! the script is expecting a list but is getting an > > integer. Could you send me the "my" molecule or a pse file with that > > molecule? or at least other molecule that give you the same error? > > > > Cheers, > > Osvaldo. > > > > > > > > On Sat, Oct 17, 2015 at 5:49 PM, Albert <mailmd2...@gmail.com> wrote: > > > >> Thanks a lot for further advice. > >> > >> Here is what I got: > >> > >> PyMOL> run exportToWeb.py > >> PyMOL>exportToWeb my > >> Traceback (most recent call last): > >> File "/home/albert/install/pymol-1.7.6/modules/pymol/parser.py", line > >> 256, in parse > >> self.result=apply(layer.kw[0],layer.args,layer.kw_args) > >> File "exportToWeb.py", line 118, in dump_rep > >> ret += parseObjMol(obj) > >> File "exportToWeb.py", line 50, in parseObjMol > >> if (rep[5] == 1): > >> TypeError: 'int' object has no attribute '__getitem__' > >> > >> > >> If possible, would you please give me some suggestions? > >> > >> Thanks a lot > >> > >> Albert > >> > >> > >> > >> > >> On 10/17/2015 04:36 PM, Osvaldo Martin wrote: > >> > >> Hi Albert, > >> > >> I do the following steps and I get a .html file as expected. > >> > >> 1. I download and unpack this > >> < > http://sourceforge.jp/projects/webglmol/downloads/54536/pymol-exporter-0.01.zip/ > > > >> file. The script there seems to be similar to the one you attached. > >> 2. Lauch PyMOL and do some stuff > >> 3. cd to the folder creating during unpacking > >> 4. run the script by doing > >> > >> run exportToWeb.py > >> > >> 5. then run the commnand > >> > >> exportToWeb PymolObjectName > >> > >> where PymolObjectName is the name of the pymol object you want to > >> export > >> 6. check the unpacked folder for a file with the name > >> PymolObjectName.html > >> > >> Could you try to follow these steps and tell us what you get? > >> > >> Cheers, > >> > >> Osvaldo. > >> > >> > >> > > > > > > > > > ------------------------------------------------------------------------------ > > > > > > > > _______________________________________________ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > > ------------------------------------------------------------------------------ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >
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