The secondary structure is only there for the first set of strands, and then that is used for the other strands when you split_states, but how do I change that entry so it applies to the other strands?
Here is that entry from the file that I attached: SHEET 1 A 2 LEU A 2 PHE A 5 0 SHEET 2 A 2 LEU B 2 PHE B 5 -1 O VAL B 3 N PHE A 4 > On Jul 23, 2015, at 10:48 AM, Smith Liu <smith_liu...@163.com> wrote: > > I think the secondary structure record (SS) has been lost during your > splitting. So just add and edit the SS record in the PDB file to the lost > ones. > > Smith > > > > > > At 2015-07-23 22:23:24, "H. Adam Steinberg" <h.adam.steinb...@gmail.com> > wrote: > Hi All, > > If you fetch 3ow9 in PyMOL, > split_states to get all six of the strands, > select all, then copy to object, > You only get the two strands, not all six, I need all six to be duplicated > into one object so I can make a long amyloid fibril. > > If I open the pdb file for 3ow9 in text edit and remove all the text for the > individual models (and the waters), then open that file in PyMOL I get all > six strands, but all the cartoon secondary structure is missing except for > the two original strands. I tired running the alter command in PyMOL, it > changes the secondary structure in the other objects I have open but not in > this pdb. > > I see the Sheet entry in the pdb file but I don’t know how to duplicate and > change the sheet entry so it applies to the other four strands in the file. > > Could someone point me to a place on the web that explains how to change the > sheet entry (I’d like to learn how to do it)? or tell me how to fix this pdb > file? > > Thanks! > > > H. Adam Steinberg 7904 Bowman Rd Lodi, WI 53555 608/592-2366
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