To be extra clear/redundant: > > The default value passed is None. If Pymol finds that the argument is None, > it takes the minimum/maximum value from the list of values,
...do you mean that it takes the minimum/maximum values from the list of b-values from within that pdb file? So that for each pdb file, blue vs. white vs. red (on a blue_white_red palette) could have very different values from one file to the next (if the structures are different in that respect)? Emily. otherwise it > will take the value provided. The interpolation is indeed linear. > > Hope it helps, > > Tsjerk > > On Tue, Jul 7, 2015 at 4:11 AM, Emilia C. Arturo (Emily) <ec...@drexel.edu> > wrote: >> >> Hello All. >> >> Can anyone tell me what values are assigned by default to the minimum >> and maximum arguments of the spectrum command? To be clear, I know how >> to change the value of these arguments, but what does PyMOL assign to >> these values if one calls the spectrum tool using the pull-down menus >> to color by b-factor (or does not include values for the minimum and >> maximum arguments at the command line)? >> >> Does it assign the smallest b-factor found in that file to 'minimum', >> and the highest b-value found to 'maximum', and then spreads the >> values linearly according to the number of colors in the chosen >> palette? I'd like for it to do that, and I'm sure it can be coded, but >> first I'd like to find out the default approach. I am using a PyMOL >> incentive package on my Mac. >> >> Regards, >> Emily. >> >> >> ------------------------------------------------------------------------------ >> Don't Limit Your Business. Reach for the Cloud. >> GigeNET's Cloud Solutions provide you with the tools and support that >> you need to offload your IT needs and focus on growing your business. >> Configured For All Businesses. Start Your Cloud Today. >> https://www.gigenetcloud.com/ >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > > -- > Tsjerk A. Wassenaar, Ph.D. > ------------------------------------------------------------------------------ Don't Limit Your Business. Reach for the Cloud. GigeNET's Cloud Solutions provide you with the tools and support that you need to offload your IT needs and focus on growing your business. Configured For All Businesses. Start Your Cloud Today. https://www.gigenetcloud.com/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
