Hi Emily,
The default value passed is None. If Pymol finds that the argument is None,
it takes the minimum/maximum value from the list of values, otherwise it
will take the value provided. The interpolation is indeed linear.
Hope it helps,
Tsjerk
On Tue, Jul 7, 2015 at 4:11 AM, Emilia C. Arturo (Emily) <ec...@drexel.edu>
wrote:
> Hello All.
>
> Can anyone tell me what values are assigned by default to the minimum
> and maximum arguments of the spectrum command? To be clear, I know how
> to change the value of these arguments, but what does PyMOL assign to
> these values if one calls the spectrum tool using the pull-down menus
> to color by b-factor (or does not include values for the minimum and
> maximum arguments at the command line)?
>
> Does it assign the smallest b-factor found in that file to 'minimum',
> and the highest b-value found to 'maximum', and then spreads the
> values linearly according to the number of colors in the chosen
> palette? I'd like for it to do that, and I'm sure it can be coded, but
> first I'd like to find out the default approach. I am using a PyMOL
> incentive package on my Mac.
>
> Regards,
> Emily.
>
>
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--
Tsjerk A. Wassenaar, Ph.D.
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