Michael
I've run in to something like this before (early ubuntu 12.04) using just using
build_seq to write small peptide .pdbs in a loop, the work around I used (I
think it was in the wiki at the time -- can't find it now) was to add a short
wait at the end of the loop, <0.1 sec was enough on my machine at the time but
that may be device/content specific.
**not my skill set**
IF I recall correctly the issue was explained as having a new run on the loop
before the buffer on the old cleared (memory:cycles racing)
Hope this helps
Jacob Pessin
Albert Einstein College of Medicine
Diabetes Research Center SIMC
Computational Chemistry & Molecular Modeling
jacob.pes...@einstein.yu.edu
1 718 839 7228
------------------------------
Message: 4
Date: Wed, 24 Jun 2015 00:13:26 +0200
From: Michael Banck <mba...@debian.org>
Subject: [PyMOL] Race condition when running scripts in "stdin" mode
To: pymol-users <pymol-users@lists.sourceforge.net>
Message-ID:
<20150623221325.gy8...@raptor.chemicalconnection.dyndns.org>
Content-Type: text/plain; charset=us-ascii
Hi,
on Debian, we got a bug report which looks like the bug reported here as
well: http://sourceforge.net/p/pymol/bugs/130/
Unfortunately, there has been no discussion of this bug so far.
There seems to be some race condition for scripts, does anybody a
work-around, and/or fix for this? Or is this a platform-dependent (or
even Debian/Ubuntu dependent) issue?
Thanks,
Michael
Message: 6
Date: Tue, 23 Jun 2015 19:45:26 -0300
From: Osvaldo Martin <aloctavo...@gmail.com>
Subject: Re: [PyMOL] Race condition when running scripts in "stdin"
mode
To: Michael Banck <mba...@debian.org>
Cc: pymol-users <pymol-users@lists.sourceforge.net>
Message-ID:
<cagmh68wyazrmopqxc5kwz+7t7knbfzb3zecbzu_jpectzz4...@mail.gmail.com>
Content-Type: text/plain; charset="utf-8"
Hi MIchael,
I can reproduce the error on a machine with Ubuntu 15.04 (64 bits) and
PyMOL 1.7.2
On Tue, Jun 23, 2015 at 7:13 PM, Michael Banck <mba...@debian.org> wrote:
> Hi,
>
> on Debian, we got a bug report which looks like the bug reported here as
> well: http://sourceforge.net/p/pymol/bugs/130/
>
> Unfortunately, there has been no discussion of this bug so far.
>
> There seems to be some race condition for scripts, does anybody a
> work-around, and/or fix for this? Or is this a platform-dependent (or
> even Debian/Ubuntu dependent) issue?
>
>
> Thanks,
>
> Michael
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