Thanks for the quick reply. That works like a charm.
On May 8, 2015, at 12:37 PM, Thomas Holder <thomas.hol...@schrodinger.com>
wrote:
> Hi Bernhard,
>
> "delete" strictly operates on object names, not on atom selections. This
> difference is unfortunately a common point of confusion.
>
> Here's a delete command which operates on a selection and therefore supports
> the "not" operator:
>
> python
> @cmd.extend
> def delete_by_sele(selection):
> cmd.delete(' '.join(cmd.get_object_list('(' + selection + ')')))
> python end
>
> If you paste this in the PyMOL command line or put it in your pymolrc script,
> you can do:
>
> PyMOL> delete_by_sele not obj_final
>
> Hope that helps.
>
> Cheers,
> Thomas
>
> On 08 May 2015, at 14:42, Bernhard Lechtenberg
> <blechtenb...@sanfordburnham.org> wrote:
>
>> Hi all,
>>
>> after an extensive pymol session, I ended up with a lot of intermediate
>> objects that I now want to delete so I will only keep my final object. Is
>> there an easy
>> way to remove all but one object? I tried the delete command, but something
>> like
>>
>> delete (not obj_final)
>>
>> did not work as expected and only deleted obj_final.
>>
>> Any help is appreciated.
>>
>> Thanks,
>> Bernhard
>>
>> Bernhard C. Lechtenberg, PhD
>> Postdoctoral Fellow
>> Riedl Lab
>> Sanford-Burnham Medical Research Institute
>> 10901 North Torrey Pines Road
>> La Jolla, CA 92037, USA
>> Phone: 858.646.3100 x 4216
>> Email: blechtenb...@sanfordburnham.org
>
> --
> Thomas Holder
> PyMOL Principal Developer
> Schrödinger, Inc.
>
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