Hi Bernhard,
"delete" strictly operates on object names, not on atom selections. This
difference is unfortunately a common point of confusion.
Here's a delete command which operates on a selection and therefore supports
the "not" operator:
python
@cmd.extend
def delete_by_sele(selection):
cmd.delete(' '.join(cmd.get_object_list('(' + selection + ')')))
python end
If you paste this in the PyMOL command line or put it in your pymolrc script,
you can do:
PyMOL> delete_by_sele not obj_final
Hope that helps.
Cheers,
Thomas
On 08 May 2015, at 14:42, Bernhard Lechtenberg
<blechtenb...@sanfordburnham.org> wrote:
> Hi all,
>
> after an extensive pymol session, I ended up with a lot of intermediate
> objects that I now want to delete so I will only keep my final object. Is
> there an easy
> way to remove all but one object? I tried the delete command, but something
> like
>
> delete (not obj_final)
>
> did not work as expected and only deleted obj_final.
>
> Any help is appreciated.
>
> Thanks,
> Bernhard
>
> Bernhard C. Lechtenberg, PhD
> Postdoctoral Fellow
> Riedl Lab
> Sanford-Burnham Medical Research Institute
> 10901 North Torrey Pines Road
> La Jolla, CA 92037, USA
> Phone: 858.646.3100 x 4216
> Email: blechtenb...@sanfordburnham.org
--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
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