Hi James -
Here is how I would label your objects in grid_mode:
# For each object, create a pseudoatom at its center of geometry to position
the label
pseudoatom myobj_label, myobj
# Set the label text for the pseudoatom
label myobj_label, "My Object"
# To show the label and the object in the same grid, combine them in a group
# (Alternatively, you can use the
grid_slot<http://www.pymolwiki.org/index.php/Grid_slot> setting for more
fine-grained control.)
group myobj_grp, myobj*
# Adjust the size and position of the label. Label position can also be
adjusted per-object.
set label_size, 10
set label_position, [10, 10, 0]
set label_position, [-10,-10,0], myobj_label
Hope that helps.
Cheers,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
http://kong.med.nyu.edu/
On Apr 12, 2015, at 9:44 AM, James Starlight
<jmsstarli...@gmail.com<mailto:jmsstarli...@gmail.com>> wrote:
Thanks !
still have not found solution for grid-mode display:
1- I need to show names of each opened object near its cartoon
2- I need to increase spacing of grid border (m.b like just empty
space)- to better discriminate between opened objects in case of its
high zooming
J
2015-04-11 14:51 GMT+02:00 João M. Damas
<jmda...@itqb.unl.pt<mailto:jmda...@itqb.unl.pt>>:
1- See http://www.pymolwiki.org/index.php/Ray_Trace_Gain. However, from my
experience, I don't think the setting works too well, so what I usually do
is to increase the resolution of the raytrace, which makes the black outline
thinner.
On Fri, Apr 10, 2015 at 4:48 PM, James Starlight
<jmsstarli...@gmail.com<mailto:jmsstarli...@gmail.com>>
wrote:
Dear Pymol users!
Here I will ask some question regarding visualization issues in pymol.
1- Using ray_trace_mode, 1 I need to decrease at least twisty width of
black countour line (especially in the loop segments).
2- Being in the split mode (visualization of the several objects on
one screen) I need to show title of each of the objects somewhere near
of its cartoon area (e,g in right upper corner)- just to know on the
produced picture names of the corresponded cartoon.
3- Also please have a look on my another topic regarding visualization
of B-factor gradients: actually I need to revert its existing color
pattern and select residues according to it's actual B-factor values
(E.g with B-factor=0, with negative and/or positive) for its
subsequent selective visualization.
Thanks a lot for the advises!
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