1- See http://www.pymolwiki.org/index.php/Ray_Trace_Gain. However, from my
experience, I don't think the setting works too well, so what I usually do
is to increase the resolution of the raytrace, which makes the black
outline thinner.
On Fri, Apr 10, 2015 at 4:48 PM, James Starlight <jmsstarli...@gmail.com>
wrote:
> Dear Pymol users!
>
> Here I will ask some question regarding visualization issues in pymol.
>
> 1- Using ray_trace_mode, 1 I need to decrease at least twisty width of
> black countour line (especially in the loop segments).
>
> 2- Being in the split mode (visualization of the several objects on
> one screen) I need to show title of each of the objects somewhere near
> of its cartoon area (e,g in right upper corner)- just to know on the
> produced picture names of the corresponded cartoon.
>
> 3- Also please have a look on my another topic regarding visualization
> of B-factor gradients: actually I need to revert its existing color
> pattern and select residues according to it's actual B-factor values
> (E.g with B-factor=0, with negative and/or positive) for its
> subsequent selective visualization.
>
> Thanks a lot for the advises!
>
>
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--
João M. Damas
PhD Student
Protein Modelling Group
ITQB-UNL, Oeiras, Portugal
Tel:+351-214469613
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Develop your own process in accordance with the BPMN 2 standard
Learn Process modeling best practices with Bonita BPM through live exercises
http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_
source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF
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