Be sure to reply to the list so everyone can benefit from the questions
and answers.
Ah, as Tsjerk mentioned, you need to wrap it in a python-python end block.
set ray_opaque_background, 0
png C:\Users\Brenton\Documents\Chem Structures\PDBs\2\2HYY -
imatinib\PyMOL movie\Image0001.png, dpi=300, ray=1
python
for i in range(2,61):
cmd.rotate('y', 6)
cmd.png("C:\Users\Brenton\Documents\Chem Structures\PDBs\2\2HYY -
imatinib\PyMOL movie\Image{}.png".format(str(i).zfill(4)), dpi=300, ray=1)
python end
On 01/06/2015 10:40 AM, Brenton Horne wrote:
> Sure is this is my code atm:
>
> set ray_opaque_background, 0
>
> png C:\Users\Brenton\Documents\Chem Structures\PDBs\2\2HYY -
> imatinib\PyMOL movie\Image0001.png, dpi=300, ray=1
>
> for i in range(2,61):
>
> rotate y, 6
>
> cmd.png("C:\Users\Brenton\Documents\Chem Structures\PDBs\2\2HYY -
> imatinib\PyMOL movie\Image{}.png".format(str(i).zfill(4)), dpi=300,
> ray=1)
>
>
> On 7/01/2015 1:33 AM, Matthew Baumgartner wrote:
>> Is it in your for loop?
>>
>> for i in range(2,61):
>> rotate y, 6
>> cmd.png("C:\Users\Brenton\Documents\Chem Structures\PDBs\2\2HYY -
>> imatinib\PyMOL movie\Image{}.png".format(str(i).zfill(4)), dpi=300,
>> ray=1)
>>
>> On 1/6/15, 10:13 AM, Brenton Horne wrote:
>>> That gave the error:
>>>
>>> cmd.png("C:\Users\Brenton\Documents\Chem Structures\PDBs\2\2HYY -
>>> imatinib\PyMOL movie\Image{}.png".format(str(i).zfill(4)), dpi=300,
>>> ray=1)
>>> Traceback (most recent call last):
>>> File "C:\Python27\lib\site-packages\pymol\parser.py", line 464, in
>>> parse
>>> exec(layer.com2+"\n",self.pymol_names,self.pymol_names)
>>> File "<string>", line 1, in <module>
>>> NameError: name 'i' is not defined
>>>
>>> On 7/01/2015 1:03 AM, Matthew Baumgartner wrote:
>>>> cmd.png("C:\Users\Brenton\Documents\Chem Structures\PDBs\2\2HYY -
>>>> imatinib\PyMOL movie\Image{}.png".format(str(i).zfill(4)), dpi=300,
>>>> ray=1)
>>>
>>
>>
>
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