Dear Pymol users!
Using below script I can load all pdbs from the work dir into 1 nmr-like
object. Could you suggest me how this script could be modified to make
alignment (or it's better structural alignment) of all pdbs against first
loaded pdb file
from pymol import cmd
import sys,glob
def get_file_list(files):
file_list = glob.glob(files)
return file_list
def load_models(files,obj,discrete=0):
"""
load_models <files>, <object>, <discrete=0>
loads multiple files (using filename globbing)
into a single object (e.g. from modelling or NMR).
use discrete=1 if you want to color individual states separately
e.g. load_models prot_*.pdb, prot
"""
if type(files) == type('string'):
file_list = get_file_list(files)
else:
file_list = files
if file_list:
file_list.sort()
for name in file_list:
cmd.load(name,obj,discrete=discrete)
else:
print "No files found for pattern %s" % files
cmd.extend('load_models',load_models)
Many thanks for help,
James
------------------------------------------------------------------------------
Slashdot TV.
Video for Nerds. Stuff that matters.
http://tv.slashdot.org/
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
