Hi Matzov, the script assumed an old (incomplete) PyMOL API. I corrected the script, please download it again.
Cheers, Thomas On 09 Jan 2014, at 16:27, Matzov Donna <matzov.do...@weizmann.ac.il> wrote: > I'm trying to use the script that is available on pymolwiki for colouring > residues according to conservation. It wasn't very clear to me so I tried to > do the given example: > reinitialize > import color_by_conservation > > # get some kinases > fetch 1opk 3dtc 3p86 2eva 3efw, async=0 > > # turn on the sequence viewer > set seq_view > > # align them into the "algn" object > for x in cmd.get_names(): cmd.align(x, "3efw and c. A", object="algn") > > # color > color_by_conservation aln=algn, as_putty=1 > > everything went as it should but when it came to the last command pymol gave > me this error: "Bad or incorrectly specified alignment object" > > How can I fix this problem? > > Thanks -- Thomas Holder PyMOL Developer ------------------------------------------------------------------------------ CenturyLink Cloud: The Leader in Enterprise Cloud Services. Learn Why More Businesses Are Choosing CenturyLink Cloud For Critical Workloads, Development Environments & Everything In Between. Get a Quote or Start a Free Trial Today. http://pubads.g.doubleclick.net/gampad/clk?id=119420431&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
