I'm trying to use the script that is available on pymolwiki for colouring
residues according to conservation. It wasn't very clear to me so I tried to do
the given example:
reinitialize
import color_by_conservation
# get some kinases
fetch 1opk 3dtc 3p86 2eva 3efw, async=0
# turn on the sequence viewer
set seq_view
# align them into the "algn" object
for x in cmd.get_names(): cmd.align(x, "3efw and c. A", object="algn")
# color
color_by_conservation aln=algn, as_putty=1
everything went as it should but when it came to the last command pymol gave me
this error: "Bad or incorrectly specified alignment object"
How can I fix this problem?
Thanks
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