Yes! This has worked. Thanks Thomas.
2013/12/5 Thomas Holder <spel...@users.sourceforge.net>
> Hi David,
>
> incentive pymol builds have the python interpreter and the _cmd module
> built into the pymol.exe executable. This means running the script with
> your system python is not supported. Instead, run your script with pymol,
> without the GUI, like this:
>
> /opt/soft/pymol-v1.5.0.3/pymol -cqr script.py
>
> Hope that helps.
>
> Cheers,
> Thomas
>
> On 05 Dec 2013, at 06:26, David McGiven wrote:
> > Dear PyMOL Users,
> >
> > I am trying to run some pymol functions from a python script. For
> simplicity purposes, the script is called "script.py" and it's as simple as
> this :
> >
> > #cat script.py
> > import pymol
> > #
> >
> > Then I run it like this :
> >
> > #export PYMOL_PATH=/opt/soft/pymol-v1.5.0.3
> > #export PYTHONPATH=/opt/soft/pymol-v1.5.0.3/modules
> > #python script.py
> > Traceback (most recent call last):
> > File "py.py", line 1, in <module>
> > import pymol
> > File "/opt/soft/pymol-v1.5.0.3/modules/pymol/__init__.py", line 473,
> in <module>
> > import _cmd
> > ImportError: No module named _cmd
> >
> > I don't understand why is it giving this error. I am running CentOS 6.2.
> I have edited $PYMOL_PATH/modules/pymol/__init.py__ and checked the
> instructions on the top of the file. It says :
> > # THE SUPPORTED WAY:
> >
> > # "python pymol/__init__.py" in an environment in which $PYMOL_PATH
> > # points to the main PyMOL directory and $PYTHONPATH includes
> > # $PYMOL_PATH/modules or where the contents of $PYMOL_PATH/modules
> > # have been installed in a standard location such as
> > # /usr/lib/python2.1/site-packages
> >
> > Well, this isn't working for me.
> >
> > Could someone please provide some help ?
> >
> > Thanks.
>
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