Hi Yarrow, should be as simple as:
PyMOL> hide surface PyMOL> show surface, (organic around 8.0) PyMOL> set transparency, 0.3 PyMOL> set two_sided_lighting See also: http://pymolwiki.org/index.php/Selection_Algebra Hope that helps. Cheers, Thomas Yarrow Madrona wrote, On 03/03/13 18:34: > Hello, > > Does anyone know how to visualize a surface within a given radius from a > ligand binding site? In chimera you can limit the display surface within > 0-X angstrom of a ligand. This allows you to see the surface surrounding > the ligand without the rest of the protein. > > I guess you could create a new selection of residues around a ligand and > show this surface but I wondered if there are any other ways of doing > this. -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
