Hi Jason, Thanks for the tip. I still couldn't get it to work. I'll google around some more, but here's the file. Thanks for any help.
Cheers, Rye On Mon, Dec 3, 2012 at 4:34 PM, Jason Vertrees < jason.vertr...@schrodinger.com> wrote: > Hi Rye, > > How about connect_cutoff in Å? There's also connect_mode > (http://www.pymolwiki.org/index.php/Connect_mode). > > If you send me a copy of your file I can look at it. > > Cheers, > > -- Jason > > On Mon, Dec 3, 2012 at 4:03 PM, Rye Terrell <ryeterr...@ryeterrell.net> > wrote: > > I have a silicon bulk system. Pymol indicates that a handful of the atoms > > are bonded to each other. Many bonds are not indicated. Is there some > value > > I can adjust that will make pymol indicate that more atoms are bonded? I > > usually do this by setting some cutoff radius, but googling around has > > yielded no results. I see that there is a way to bond atom pairs > manually, > > but that would be incredibly tedious given the number of bonds there > should > > be. > > > > Thanks for any help! > > Rye > > > > > ------------------------------------------------------------------------------ > > Keep yourself connected to Go Parallel: > > BUILD Helping you discover the best ways to construct your parallel > > projects. > > http://goparallel.sourceforge.net > > _______________________________________________ > > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > > > -- > Jason Vertrees, PhD > Director of Core Modeling Product Management > Schrödinger, Inc. > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 >
1.xyz
Description: Protein Databank data
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