I have a silicon bulk system. Pymol indicates that a handful of the atoms
are bonded to each other. Many bonds are not indicated. Is there some value
I can adjust that will make pymol indicate that more atoms are bonded? I
usually do this by setting some cutoff radius, but googling around has
yielded no results. I see that there is a way to bond atom pairs manually,
but that would be incredibly tedious given the number of bonds there should
be.
Thanks for any help!
Rye
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