Hi Justin, You're correct, it doesn't make sense. We hope to extend more and more settings to atom/bond-level properties in PyMOL. We also plan on improving the settings' interactions and documentation. You're welcome to post this to PyMOL's open-source bug tracker if you like.
Cheers, -- Jason On Mon, Aug 27, 2012 at 6:12 AM, Justin Lecher <j.lec...@fz-juelich.de> wrote: > Hi, > > Can I set the transparency level on residue basis? I should, shouldn't I? > > If I do > >>set cartoon_transparency, 0, chain a > Setting: cartoon_transparency set for 1100 atoms in object "3sw1". > > it seems that pymol sets something(at least this is what the prompt > says) but nothing changes visually. Bug of feature? > > Thanks for help, > > Justin > > > -- > Justin Lecher > Institute of Complex Systems > ICS-6 Structural Biochemistry > Research Centre Juelich > 52425 Juelich, Germany > phone: +49 2461 61 2117 > > > > ------------------------------------------------------------------------------ > Live Security Virtual Conference > Exclusive live event will cover all the ways today's security and > threat landscape has changed and how IT managers can respond. Discussions > will include endpoint security, mobile security and the latest in malware > threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrödinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
