Julian, Glad it works. I'll add a note to the PyMOLWiki about that.
Cheers, -- Jason On Mon, Dec 12, 2011 at 2:57 PM, Julian Zachmann <frankjulian.zachm...@uab.cat> wrote: > Hi Jason, > > finally I managed to solve the problem myself. > It was not a problem of pymol but of the drivers. > > If anybody has similar problems with Intel graphical cards and Ubuntu I > recommend this page: > https://launchpad.net/~glasen/+archive/intel-driver > > But thank you very much for your attention and your will to help me. > > Best regards, > Julian > > > 2011/12/12 Jason Vertrees <jason.vertr...@schrodinger.com> >> >> Hi Julian, >> >> > you were right, there was a problem with my graphical card. I updated >> > the >> > drivers but still I'm having the same problem. >> > Also unsetting the shaders didn't bring any improvement. >> >> Wow--that's cool enough to be a feature, not a bug. Just kidding, >> we're looking into it. >> >> Can you please answer a few questions: >> * how many objects were loaded in PyMOL? This image looks like there >> are three objects fighting for the depth buffer. >> * does this happen for all representations or just cartoon? >> * what did you do to replicate this in PyMOL? What should I type to >> try to recreate it? >> >> Cheers, >> >> -- Jason >> >> >> Julian, >> >> >> >> Can you please send me a screenshot of what you see? >> >> >> >> Also, does: >> >> >> >> unset use_shaders >> >> >> >> help? It sounds like your video driver needs to be updated. >> >> >> >> Cheers, >> >> >> >> -- Jason >> >> >> >> On Wed, Dec 7, 2011 at 1:15 PM, Julian Zachmann >> >> <frankjulian.zachm...@uab.cat> wrote: >> >> > Dear Pymol-Users, >> >> > >> >> > I have a rather strange error. I can open pymol without having any >> >> > problems >> >> > or warnings. >> >> > But when I'm looking at a protein then - especially when it is in >> >> > cartoon >> >> > mode, and even more when i move it around a lot - it is getting more >> >> > and >> >> > more blurry and it seems as if there are many small black spots on my >> >> > protein. When I have more proteins aligned in different colors then I >> >> > also >> >> > see spots in the different colors on the protein. Has this problem >> >> > occured >> >> > to anyone else before? Does anyone know a solution to this problem? >> >> > >> >> > My pymol version is PyMOL 1.4.1, I'm running it on Ubuntu 11.10 >> >> > 64bit, >> >> > and >> >> > my graphical card is Intel Corporation 2nd Generation Core Processor >> >> > Family. >> >> > >> >> > Best Regards, Julian >> >> > >> >> > >> >> > >> >> > ------------------------------------------------------------------------------ >> >> > Cloud Services Checklist: Pricing and Packaging Optimization >> >> > This white paper is intended to serve as a reference, checklist and >> >> > point of >> >> > discussion for anyone considering optimizing the pricing and >> >> > packaging >> >> > model >> >> > of a cloud services business. Read Now! >> >> > http://www.accelacomm.com/jaw/sfnl/114/51491232/ >> >> > _______________________________________________ >> >> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> >> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> > Archives: >> >> > http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> >> >> >> >> >> >> >> -- >> >> Jason Vertrees, PhD >> >> PyMOL Product Manager >> >> Schrodinger, LLC >> >> >> >> (e) jason.vertr...@schrodinger.com >> >> (o) +1 (603) 374-7120 >> > >> > >> > >> > >> > -- >> > Julian Zachmann >> > Laboratori de Medicina Computacional >> > Unitat de Bioestadistica. Facultat de Medicina >> > Universitat Autonoma de Barcelona >> > 08193 Bellaterra (Barcelona). Spain >> > Phone: (3493) 581 2797 >> > Fax: (3493) 581 2344 >> > E-mail: frankjulian.zachm...@uab.cat >> > http://lmc.uab.es >> >> >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrodinger, LLC >> >> (e) jason.vertr...@schrodinger.com >> (o) +1 (603) 374-7120 > > > > > -- > Julian Zachmann > Laboratori de Medicina Computacional > Unitat de Bioestadistica. Facultat de Medicina > Universitat Autonoma de Barcelona > 08193 Bellaterra (Barcelona). Spain > Phone: (3493) 581 2797 > Fax: (3493) 581 2344 > E-mail: frankjulian.zachm...@uab.cat > http://lmc.uab.es -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Learn Windows Azure Live! Tuesday, Dec 13, 2011 Microsoft is holding a special Learn Windows Azure training event for developers. It will provide a great way to learn Windows Azure and what it provides. You can attend the event by watching it streamed LIVE online. Learn more at http://p.sf.net/sfu/ms-windowsazure _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
