Hi Julian, > you were right, there was a problem with my graphical card. I updated the > drivers but still I'm having the same problem. > Also unsetting the shaders didn't bring any improvement.
Wow--that's cool enough to be a feature, not a bug. Just kidding, we're looking into it. Can you please answer a few questions: * how many objects were loaded in PyMOL? This image looks like there are three objects fighting for the depth buffer. * does this happen for all representations or just cartoon? * what did you do to replicate this in PyMOL? What should I type to try to recreate it? Cheers, -- Jason >> Julian, >> >> Can you please send me a screenshot of what you see? >> >> Also, does: >> >> unset use_shaders >> >> help? It sounds like your video driver needs to be updated. >> >> Cheers, >> >> -- Jason >> >> On Wed, Dec 7, 2011 at 1:15 PM, Julian Zachmann >> <frankjulian.zachm...@uab.cat> wrote: >> > Dear Pymol-Users, >> > >> > I have a rather strange error. I can open pymol without having any >> > problems >> > or warnings. >> > But when I'm looking at a protein then - especially when it is in >> > cartoon >> > mode, and even more when i move it around a lot - it is getting more and >> > more blurry and it seems as if there are many small black spots on my >> > protein. When I have more proteins aligned in different colors then I >> > also >> > see spots in the different colors on the protein. Has this problem >> > occured >> > to anyone else before? Does anyone know a solution to this problem? >> > >> > My pymol version is PyMOL 1.4.1, I'm running it on Ubuntu 11.10 64bit, >> > and >> > my graphical card is Intel Corporation 2nd Generation Core Processor >> > Family. >> > >> > Best Regards, Julian >> > >> > >> > ------------------------------------------------------------------------------ >> > Cloud Services Checklist: Pricing and Packaging Optimization >> > This white paper is intended to serve as a reference, checklist and >> > point of >> > discussion for anyone considering optimizing the pricing and packaging >> > model >> > of a cloud services business. Read Now! >> > http://www.accelacomm.com/jaw/sfnl/114/51491232/ >> > _______________________________________________ >> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> >> >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrodinger, LLC >> >> (e) jason.vertr...@schrodinger.com >> (o) +1 (603) 374-7120 > > > > > -- > Julian Zachmann > Laboratori de Medicina Computacional > Unitat de Bioestadistica. Facultat de Medicina > Universitat Autonoma de Barcelona > 08193 Bellaterra (Barcelona). Spain > Phone: (3493) 581 2797 > Fax: (3493) 581 2344 > E-mail: frankjulian.zachm...@uab.cat > http://lmc.uab.es -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Learn Windows Azure Live! Tuesday, Dec 13, 2011 Microsoft is holding a special Learn Windows Azure training event for developers. It will provide a great way to learn Windows Azure and what it provides. You can attend the event by watching it streamed LIVE online. Learn more at http://p.sf.net/sfu/ms-windowsazure _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
