Hi Bradley, PyMOL uses its own internal routine for secondary structure classification. The iterator token is "ss". Check out http://pymolwiki.org/index.php/Ss and http://pymolwiki.org/index.php/Iterate_sses and http://pymolwiki.org/index.php/WriteSS.
Cheers, -- Jason On Tue, Jun 22, 2010 at 4:04 PM, Bradley Hintze <bradle...@aggiemail.usu.edu> wrote: > Hi all, > > Is there a way to get an output from PyMol's DSS command (like a dssp output)? > > -- > Bradley J. Hintze > Graduate Student > Duke University > School of Medicine > 801-712-8799 > > ------------------------------------------------------------------------------ > ThinkGeek and WIRED's GeekDad team up for the Ultimate > GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the > lucky parental unit. See the prize list and enter to win: > http://p.sf.net/sfu/thinkgeek-promo > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ ThinkGeek and WIRED's GeekDad team up for the Ultimate GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the lucky parental unit. See the prize list and enter to win: http://p.sf.net/sfu/thinkgeek-promo _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
