I'm writing a manuscript and just need clarification.
Does "cmd.iterate('all and n. ca', 'stored.stored_ss.append([ss])')"
use pymol's DSS to assign secondary structure? If not, how is this
command assigning secondary structure?
Thanks,
Bradley
On Tue, Jun 22, 2010 at 7:37 PM, Jason Vertrees
<jason.vertr...@schrodinger.com> wrote:
> Hi Bradley,
>
> PyMOL uses its own internal routine for secondary structure
> classification. The iterator token is "ss". Check out
> http://pymolwiki.org/index.php/Ss and
> http://pymolwiki.org/index.php/Iterate_sses and
> http://pymolwiki.org/index.php/WriteSS.
>
> Cheers,
>
> -- Jason
>
> On Tue, Jun 22, 2010 at 4:04 PM, Bradley Hintze
> <bradle...@aggiemail.usu.edu> wrote:
>> Hi all,
>>
>> Is there a way to get an output from PyMol's DSS command (like a dssp
>> output)?
>>
>> --
>> Bradley J. Hintze
>> Graduate Student
>> Duke University
>> School of Medicine
>> 801-712-8799
>>
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>
>
>
> --
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrodinger, LLC
>
> (e) jason.vertr...@schrodinger.com
> (o) +1 (603) 374-7120
>
--
Bradley J. Hintze
Graduate Student
Duke University
School of Medicine
801-712-8799
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