Mark, you need to set
set stick_transparency=0.9, M223Dser > -----Original Message----- > From: Dr. Mark Mayer [mailto:may...@mail.nih.gov] > Sent: Thursday, March 20, 2008 5:22 PM > To: Schubert, Carsten [PRDUS] > Cc: pymol-users@lists.sourceforge.net > Subject: RE: [PyMOL] Transparency in individual molecules/objects? > > > Hi Carsten, > > Thanks for response - I Just tried following and its still drawn as > solid object. Did I mess up or should this have worked? > > create M223Dser, /mol4//D/MET`223 and !mc > show sticks, M223Dser > set transparency=0.9, M223Dser > > > >Mark, > > > >as far as I know, transparency is supported for sufaces and sticks > >or cartoons. Filter the settings menu for transparency to get a > >better idea. To set transparency for an object > > > >set transparency = 0.5, <object> > > > >should work > > > > Carsten > > > >> -----Original Message----- > >> From: pymol-users-boun...@lists.sourceforge.net > >> [mailto:pymol-users-boun...@lists.sourceforge.net]on Behalf > >> Of Dr. Mark > >> Mayer > >> Sent: Thursday, March 20, 2008 4:46 PM > >> To: PyMOL-users@lists.sourceforge.net > >> Subject: [PyMOL] Transparency in individual molecules/objects? > >> > >> > >> Hi All,' > >> > >> If I have a PyMol script with multiple molecules loaded, > is there a > >> way to set transparency (say for sticks or spheres), on a by > >> molecule, or even better on an object by object case. > Used to be able > >> to do this in molscript/raster3d, but for PyMol I've only > figured out > >> how to set sphere and stick transparency as global variables > >> > >> Thanks > >> > >> -- > > > Mark Mayer Ph.D. > > > > > -- > > > >
