Hi Carsten,
Thanks for response - I Just tried following and its still drawn as
solid object. Did I mess up or should this have worked?
create M223Dser, /mol4//D/MET`223 and !mc
show sticks, M223Dser
set transparency=0.9, M223Dser
Mark,
as far as I know, transparency is supported for sufaces and sticks
or cartoons. Filter the settings menu for transparency to get a
better idea. To set transparency for an object
set transparency = 0.5, <object>
should work
Carsten
-----Original Message-----
From: pymol-users-boun...@lists.sourceforge.net
[mailto:pymol-users-boun...@lists.sourceforge.net]on Behalf
Of Dr. Mark
Mayer
Sent: Thursday, March 20, 2008 4:46 PM
To: PyMOL-users@lists.sourceforge.net
Subject: [PyMOL] Transparency in individual molecules/objects?
Hi All,'
If I have a PyMol script with multiple molecules loaded, is there a
way to set transparency (say for sticks or spheres), on a by
molecule, or even better on an object by object case. Used to be able
to do this in molscript/raster3d, but for PyMol I've only figured out
how to set sphere and stick transparency as global variables
Thanks
--
> Mark Mayer Ph.D.
--
