[PyMOL] Process a lot of files

[Horacio Emilio Pérez Sánchez]

Hi,

I have 640 very similar protein structures in .mol2 format, named 
2jnk$i_rec.mol2 where $i is the protein number. I need to align all them 
respect to the first protein (2jnk1_rec.mol2) and then save separately 
each new aligned protein with a different name, for instance 
2jnkp$i_rec.mol2.

I guess that this can be done using pymol scripts but I have no 
experience with this (but from today on I will start to study). Do you 
know some method or have some script for this ? Or where to look for 
information ?

Thanks