> But does this problem look like a bug ? No, it works as intended. The issue here is that the GUI just does not (yet) provide the capability of coloring representations, just atoms. So if you color representations directly using a command, then you'll need to use a command uncolor them.
At present, only a small fraction of PyMOL's capabities are directly exposed in the user interface. The rest must be accessed through commands, scripts, and/or Python programs. I'm not saying that is good...it is just how things are right now. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Sebastien Moretti > Sent: Monday, October 17, 2005 11:45 PM > To: pymol-users > Subject: [Re: [PyMOL] [colors frozen for rendering modes > defined in .pymolrc]] > > >>>Sebastien, > >>> > >>> > >>>>I cannot > >>>>change the color for rendering modes I defined. > >>> > >>>I do not understand what you mean by this. > >>> > >>>Cheers, > >>>Warren > >> > >>I mean that the color, for cartoon view, is unchangeable when 'set > >>cartoon_color' is defined in the $HOME/.pymolrc file. > >>Thus, when I define 'set cartoon_color' in the > $HOME/.pymolrc file, I > >>cannot change the color, for the cartoons, from the GUI. > >> > >>The color is kept whatever I do. > > > > I take it that you mean that choosing the "C" box on the right-hand > > menu for the object in question and then selecting a colour or > > colouring scheme results in no change to your cartoon > representation. > > In that case, I think that what you need to do is type: > > > > set cartoon_color, default > > > > Then the cartoon is not forced to be the colour that you > set (slate) > > but takes on the colour of the atoms in the object. > > > > Cheers, > > Rob > > Yes, that's it. > I know that I only have to comment or change this line. > > But does this problem look like a bug ? > > -- > Sébastien Moretti > http://www.igs.cnrs-mrs.fr/ > CNRS - IGS > 31 chemin Joseph Aiguier > 13402 Marseille cedex > > > ------------------------------------------------------- > This SF.Net email is sponsored by: > Power Architecture Resource Center: Free content, downloads, > discussions, > and more. http://solutions.newsforge.com/ibmarch.tmpl > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > >
