This is an odd concidence, since I was just about to post about
something very similar.
I would like to use rtools commands from a .pml that is read from the
command line (eg - with the -qc flag, instead of using the graphical
interface).
When starting pymol normally, rtools loads and everything is hunky dory.
However, even if I add a "run <path>/rtools.py" command to the .pml
script, none of the rtools commands are recognized. Manually running
rtools.py from within the .pml produces no errors.
Is there a way to use rtools from within a script that never sees the
graphical front end?
Jacob
Christian Rummey wrote:
dear pymol users!
I use the Kristian Roter's rtools for easy access pdb files.
however, if I start a pmyol script (.pml, which I just double-click in
windows)
with a command like
pdb 1kv2
to get a pdb file loaded, I get an error which is, unfortunately,
beyond my pymol/python knowledge:
PyMOL>pdb 1kv2
Traceback (most recent call last):
File "C:\Programme\DeLano Scientific\PyMOL\modules\pymol\parser.py",
line 255, in parse
exec(com2[nest]+"\n",pymol_names,pymol_names)
File "<string>", line 1
pdb 1kv2
^
SyntaxError: invalid syntax
[...]
pymol launches as usual after that, and I also can use
rtools commands without problems within it.
ideas?
thanks,
christian
--
Jacob Corn
UC Berkeley - Berger Lab
Lab: 510-643-8893
Fax: 510-643-9290
jc...@uclink.berkeley.edu
