Hi!
I want to color the cartoon of a protein that has been aligned to
another protein where the color changes as the RMSD changes. My python
programmer husband is helping me by adapting Robert Campbell's
color_b.py script but I am not sure where to get the RMSD values. I was
thinking intra_fit, or intra_rms or intra_rms_cur would work because
they return an array which could be used but it is not clear to me how
they work. I don't see where to put the two sets of atoms; rms and fit
have the seemingly correct input but don't return the array, right?
Thanks for any clues.
Cheers,
Holly
