Many thanks for the replies. I had forgotten the import statement (Doh!).
Now working fine again.
On a different note, one of the best features of 0.86, in my humble
opinion, is the new scrolling objects list. Previously I've created
sidechain objects to toggle individual sidechains on/off with one mouse
click using the following:
create MET1, (1/* & !n;N,C,O,H,HA,H03)
cmd.show("sticks","MET1")
util.cbaw("MET1")
cmd.disable('MET1') # disable at startup
and for small proteins it's not too time consuming to cut/paste/alter a
script to do this for every sidechain in the molecule (performance is a tad
slow on my old PII/NT machine but fine on faster PCs). Now I can toggle any
sidechain on/off with one mouse click and it doesn't matter how many
objects I have, similar to what you can do in SwissPDB viewer.
Any way my question is, can anybody think of a way to write a script that
would iterate through any pdb file and create individual objects MET1,
ALA2, ASP3... to AAn etc at the push of a scriptbox button?? My
python/scripting isn't so good but I'm learning!
Cheers,
Chris.
___________________________________________________________
Dr Chris Winfield Lab: N317/318
Post-Doctoral Researcher Tel: +44 (0)1179 546 324
School of Chemistry Fax: +44 (0)1179 298 611
University of Bristol Mob: +44 (0)7866 550 518
Cantocks Close chris.winfi...@bristol.ac.uk
Bristol BS8 1TS
___________________________________________________________
--On 08 January 2003 12:24 +0100 Kristian Rother
<kristian.rot...@charite.de> wrote:
Am Dienstag, 7. Januar 2003 11:08 schrieb Chris Winfield:
Has anybody managed to get ScriptBox working under Windows with v0.86??
Yes, me at least :-)
I'm
having trouble.
Here's my checklist:
1.) Did you write an 'import ScriptBox' statement into PMGApp.py?
2.) Is Scriptbox.py really in the pmg_tk directory (OK, You mentioned
that already)?
Hm, the people i know of had no problems further than this yet. Let me
know whether this works.
Kristian
I put ScriptBox.py in the appropriate placeplace and the following at the
end of the createMain(self) procedure in PMGApp.py in the usual manner:
ScriptBox.__init__(self)
But get the following error on loading PyMol:
NameError: global name 'ScriptBox' is not defined
If anyone has any suggestions they'd be most appreciated. I like
ScriptBox a lot so do you think there's any chance of incorporating this
into PyMol either as a GUI window or as its own dropdown scripts menu
that could also list all the scripts in a given directory??
Cheers,
Chris.
___________________________________________________________
Dr Chris Winfield Lab: N317/318
Post-Doctoral Researcher Tel: +44 (0)1179 546 324
School of Chemistry Fax: +44 (0)1179 298 611
University of Bristol Mob: +44 (0)7866 550 518
Cantocks Close chris.winfi...@bristol.ac.uk
Bristol BS8 1TS
___________________________________________________________
-------------------------------------------------------
This SF.NET email is sponsored by:
SourceForge Enterprise Edition + IBM + LinuxWorld = Something 2 See!
http://www.vasoftware.com
_______________________________________________
PyMOL-users mailing list
PyMOL-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/pymol-users
