On Thu, Sep 29, 2016 at 6:38 PM, Hernán Morales Durand <hernan.mora...@gmail.com> wrote: > > > 2016-09-29 5:22 GMT-03:00 Serge Stinckwich <serge.stinckw...@gmail.com>: >> >> On Thu, Sep 29, 2016 at 10:02 AM, Hernán Morales Durand >> <hernan.mora...@gmail.com> wrote: >> > Hi Serge, >> > >> > 2016-09-29 4:05 GMT-03:00 Serge Stinckwich <serge.stinckw...@gmail.com>: >> >> >> >> Hi Hernán, >> >> >> >> very impressive demo ! >> >> >> > >> > Thanks! >> > >> >> >> >> We are working on similar tools in the context of epidemiological >> >> modelling: >> >> https://github.com/UMMISCO/kendrick >> >> >> >> I see the nice table views. >> >> Did you build something specific or reuse existing stuff ? Can you >> >> edit tables from UI ? >> > >> > >> > I built several support packages. From helpers like SpecUIAddOns and >> > StringExtensions to a Query Builder and a Project Framework (the Project >> > UI >> > is based on the work of Peter Uhnak IIRC). The GenBank Browser could be >> > generalized to a XML node editor. >> > >> > For editing tables it was never a requirement for the app. >> >> Ok I will have a look later. >> >> >> Territories looks interesting. We might be interesting to use such >> >> information for building spatial epidemiology simulation evolving many >> >> countries. Looks at Ebola modelling we have done here: >> >> >> >> >> >> https://dl.dropboxusercontent.com/u/31543901/AgileVisualization/EpidemiologicalModels/0301-EpidemiologicalModels.html >> >> >> > >> > It looks really interesting! >> > >> > For Territorial I am analyzing now what we could get from Bioregions. >> > Integration of repositories is not so straightforward, so I plan also to >> > finish my Code Generator to automate generation of classes and methods >> > when >> > importing CSV's and XML's, a good test case could be the Unicode's CLDR. >> > In PhyloclasTalk for most analysis we start always from the reported DNA >> > sequences, for example if we would have to analyze Ebola we would start >> > from >> > here >> > >> > https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/Database/nph-select.cgi >> > and then apply NER to curate the locations or other features of >> > isolates. If >> > you execute the query for Zaire ebolavirus, the PhyloclassTalk GenBank >> > Browser could be adapted to load the CSV (which seems pretty curated) or >> > accession list, and then use the Classifier directly. >> > I see you define routes in your code, good starting point to add the >> > feature >> > :) >> >> Routes ? yes, because usually when you are doing an epidemiological >> modeling, you want to know how the countries are connected and what >> the rates of propagation between these countries. Some people are >> using flights routes also (they are available freely on Internet). >> >> We are not working at the level of virus DNA sequences, we are just >> modelling propagation of diseases. >> But integrating both would be amazing in the long term. >> >> I think that Territorial is not MIT, all Kendrick code is MIT and I'm >> bit reluctant to mix licences. >> This is the only drawback for me at the moment. >> > > I changed the Territorial license to MIT some days after the announce: > http://forum.world.st/ANN-Territorial-Re-Licensing-td4914705.html
Great Hernan ! Thank you. I will have a look when I found time :-) -- Serge Stinckwich UCBN & UMI UMMISCO 209 (IRD/UPMC) Every DSL ends up being Smalltalk http://www.doesnotunderstand.org/
