2016-09-29 5:22 GMT-03:00 Serge Stinckwich <serge.stinckw...@gmail.com>:
> On Thu, Sep 29, 2016 at 10:02 AM, Hernán Morales Durand > <hernan.mora...@gmail.com> wrote: > > Hi Serge, > > > > 2016-09-29 4:05 GMT-03:00 Serge Stinckwich <serge.stinckw...@gmail.com>: > >> > >> Hi Hernán, > >> > >> very impressive demo ! > >> > > > > Thanks! > > > >> > >> We are working on similar tools in the context of epidemiological > >> modelling: > >> https://github.com/UMMISCO/kendrick > >> > >> I see the nice table views. > >> Did you build something specific or reuse existing stuff ? Can you > >> edit tables from UI ? > > > > > > I built several support packages. From helpers like SpecUIAddOns and > > StringExtensions to a Query Builder and a Project Framework (the Project > UI > > is based on the work of Peter Uhnak IIRC). The GenBank Browser could be > > generalized to a XML node editor. > > > > For editing tables it was never a requirement for the app. > > Ok I will have a look later. > > >> Territories looks interesting. We might be interesting to use such > >> information for building spatial epidemiology simulation evolving many > >> countries. Looks at Ebola modelling we have done here: > >> > >> https://dl.dropboxusercontent.com/u/31543901/AgileVisualization/ > EpidemiologicalModels/0301-EpidemiologicalModels.html > >> > > > > It looks really interesting! > > > > For Territorial I am analyzing now what we could get from Bioregions. > > Integration of repositories is not so straightforward, so I plan also to > > finish my Code Generator to automate generation of classes and methods > when > > importing CSV's and XML's, a good test case could be the Unicode's CLDR. > > In PhyloclasTalk for most analysis we start always from the reported DNA > > sequences, for example if we would have to analyze Ebola we would start > from > > here > > https://www.ncbi.nlm.nih.gov/genomes/VirusVariation/ > Database/nph-select.cgi > > and then apply NER to curate the locations or other features of > isolates. If > > you execute the query for Zaire ebolavirus, the PhyloclassTalk GenBank > > Browser could be adapted to load the CSV (which seems pretty curated) or > > accession list, and then use the Classifier directly. > > I see you define routes in your code, good starting point to add the > feature > > :) > > Routes ? yes, because usually when you are doing an epidemiological > modeling, you want to know how the countries are connected and what > the rates of propagation between these countries. Some people are > using flights routes also (they are available freely on Internet). > > We are not working at the level of virus DNA sequences, we are just > modelling propagation of diseases. > But integrating both would be amazing in the long term. > > I think that Territorial is not MIT, all Kendrick code is MIT and I'm > bit reluctant to mix licences. > This is the only drawback for me at the moment. > > I changed the Territorial license to MIT some days after the announce: http://forum.world.st/ANN-Territorial-Re-Licensing-td4914705.html Regards, Hernán > Regards, > -- > Serge Stinckwich > UCBN & UMI UMMISCO 209 (IRD/UPMC) > Every DSL ends up being Smalltalk > http://www.doesnotunderstand.org/ > >
