Do you get this failure with petsc main branch as well? Satish
On Thu, 21 Sep 2023, Blaise Bourdin wrote: > FWIW, CLT 15.0 also seems to include changes to the linker, with incompatible > options etc… I was able to rebuild mpich and petsc but I get many linker > warnings and have not fully tested my build > > Before CLT 15.0 update > > SiMini:mef90-dmplex (dmplex)$ ld -v > > @(#)PROGRAM:ld PROJECT:ld64-857.1 > > BUILD 23:13:29 May 7 2023 > > configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 > x86_64 x86_64h armv6m armv7k armv7m armv7em > > LTO support using: LLVM version 14.0.3, (clang-1403.0.22.14.1) (static > support for 29, runtime is 29) > > TAPI support using: Apple TAPI version 14.0.3 (tapi-1403.0.5.1) > > > vs after: > > bblaptop:mef90-dmplex (dmplex)$ ld -v > > @(#)PROGRAM:ld PROJECT:dyld-1015.7 > > BUILD 18:48:48 Aug 22 2023 > > configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 > x86_64 x86_64h armv6m armv7k armv7m armv7em > > will use ld-classic for: armv6 armv7 armv7s arm64_32 i386 armv6m armv7k > armv7m armv7em > > LTO support using: LLVM version 15.0.0 (static support for 29, runtime is 29) > > TAPI support using: Apple TAPI version 15.0.0 (tapi-1500.0.12.3) > > Library search paths: > > Framework search paths: > > > > bblaptop:tutorials (main)$ pwd > > /opt/HPC/petsc-main/src/vec/vec/tutorials > > bblaptop:tutorials (main)$ make ex1 > > mpicc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined > -Wl,suppress -Wl,-search_paths_first -Wl,-no_compact_unwind > -Wimplicit-function-declaration -Wunused -Wuninitialized -fPIC -g3 -O0 > -I/opt/HPC/petsc-main/include > -I/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/include -I/opt/X11/include > ex1.c -Wl,-rpath,/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib > -L/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib > -Wl,-rpath,/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib > -L/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib -Wl,-rpath,/opt/X11/lib > -L/opt/X11/lib -Wl,-rpath,/opt/homebrew/Cellar/mpich/4.1.2/lib > -L/opt/homebrew/Cellar/mpich/4.1.2/lib > -Wl,-rpath,/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin22/13 > > -L/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin22/13 > -Wl,-rpath,/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc > -L/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc > -Wl,-rpath,/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current > -L/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current -lpetsc -lHYPRE -ldmumps > -lmumps_common -lpord -lpthread -lscalapack > -lsuperlu -lml -llapack -lblas -lparmetis -lmetis -lexoIIv2for32 -lexodus > -lnetcdf -lpnetcdf -lhdf5_hl -lhdf5 -lchaco -ltriangle -lz -lctetgen -lX11 > -lmpifort -lmpi -lpmpi -lgfortran -lemutls_w -lquadmath -lc++ -o ex1 > > ld: warning: -multiply_defined is obsolete > > ld: warning: -multiply_defined is obsolete > > ld: warning: duplicate -rpath > '/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib' ignored > > ld: warning: -bind_at_load is deprecated on macOS > > ld: warning: ignoring duplicate libraries: '-lmpi', '-lpmpi' > > > > > That’s quite a curveball a week ahead of a major software update. > > Blaise > > On Sep 20, 2023, at 10:43 PM, Ju Liu <[email protected]> wrote: > > Caution: External email. > > Hi PETSc team: > I recently got my Xcode command line tools upgraded to version 15. When > installing PETSc, the configure command returns an error. My configure > command is > > ./configure --with-cc=gcc --with-fc=0 --with-cxx=0 --download-f2cblaslapack > --download-mpich > > and the message is "Cannot locate all the standard C header files needed by > PETSc". > > The configure.log file is attached. > > How shall I fix this? > > Thanks, > > Ju > <configure.log> > > > — > Canada Research Chair in Mathematical and Computational Aspects of Solid > Mechanics (Tier 1) > Professor, Department of Mathematics & Statistics > Hamilton Hall room 409A, McMaster University > 1280 Main Street West, Hamilton, Ontario L8S 4K1, Canada > https://www.math.mcmaster.ca/bourdin | +1 (905) 525 9140 ext. 27243 > > >
