Re: [petsc-users] PETSc with Xcode 15

[Blaise Bourdin]

FWIW, CLT 15.0 also seems to include changes to the linker, with incompatible options etc… I was able to rebuild mpich and petsc but I get many linker warnings and have not fully tested my build Before CLT 15.0 update SiMini:mef90-dmplex (dmplex)$ ld -v @(#)PROGRAM:ld  PROJECT:ld64-857.1 BUILD 23:13:29 May  7 2023 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em LTO support using: LLVM version 14.0.3, (clang-1403.0.22.14.1) (static support for 29, runtime is 29) TAPI support using: Apple TAPI version 14.0.3 (tapi-1403.0.5.1) vs after: bblaptop:mef90-dmplex (dmplex)$ ld -v @(#)PROGRAM:ld  PROJECT:dyld-1015.7 BUILD 18:48:48 Aug 22 2023 configured to support archs: armv6 armv7 armv7s arm64 arm64e arm64_32 i386 x86_64 x86_64h armv6m armv7k armv7m armv7em will use ld-classic for: armv6 armv7 armv7s arm64_32 i386 armv6m armv7k armv7m armv7em LTO support using: LLVM version 15.0.0 (static support for 29, runtime is 29) TAPI support using: Apple TAPI version 15.0.0 (tapi-1500.0.12.3) Library search paths: Framework search paths: bblaptop:tutorials (main)$ pwd /opt/HPC/petsc-main/src/vec/vec/tutorials bblaptop:tutorials (main)$ make ex1 mpicc -Wl,-bind_at_load -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-search_paths_first -Wl,-no_compact_unwind -Wimplicit-function-declaration -Wunused -Wuninitialized -fPIC -g3 -O0  -I/opt/HPC/petsc-main/include -I/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/include -I/opt/X11/include      ex1.c  -Wl,-rpath,/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib -L/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib -Wl,-rpath,/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib -L/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -Wl,-rpath,/opt/homebrew/Cellar/mpich/4.1.2/lib -L/opt/homebrew/Cellar/mpich/4.1.2/lib -Wl,-rpath,/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin22/13 -L/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc/aarch64-apple-darwin22/13 -Wl,-rpath,/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc -L/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current/gcc -Wl,-rpath,/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current -L/opt/homebrew/Cellar/gcc/13.2.0/lib/gcc/current -lpetsc -lHYPRE -ldmumps -lmumps_common -lpord -lpthread -lscalapack -lsuperlu -lml -llapack -lblas -lparmetis -lmetis -lexoIIv2for32 -lexodus -lnetcdf -lpnetcdf -lhdf5_hl -lhdf5 -lchaco -ltriangle -lz -lctetgen -lX11 -lmpifort -lmpi -lpmpi -lgfortran -lemutls_w -lquadmath -lc++ -o ex1 ld: warning: -multiply_defined is obsolete ld: warning: -multiply_defined is obsolete ld: warning: duplicate -rpath '/opt/HPC/petsc-main/ventura-gcc13.2-arm64-g/lib' ignored ld: warning: -bind_at_load is deprecated on macOS ld: warning: ignoring duplicate libraries: '-lmpi', '-lpmpi' That’s quite a curveball a week ahead of a major software update. Blaise On Sep 20, 2023, at 10:43 PM, Ju Liu <liu...@gmail.com> wrote: Caution: External email. Hi PETSc team: I recently got my Xcode command line tools upgraded to version 15. When installing PETSc, the configure command returns an error. My configure command is  ./configure --with-cc=gcc --with-fc=0 --with-cxx=0 --download-f2cblaslapack --download-mpich and the message is "Cannot locate all the standard C header files needed by PETSc". The configure.log file is attached. How shall I fix this?  Thanks, Ju <configure.log> —  Canada Research Chair in Mathematical and Computational Aspects of Solid Mechanics (Tier 1) Professor, Department of Mathematics & Statistics Hamilton Hall room 409A, McMaster University 1280 Main Street West, Hamilton, Ontario L8S 4K1, Canada  https://www.math.mcmaster.ca/bourdin | +1 (905) 525 9140 ext. 27243