Indeed small differences in XYZ coordinates, distances, etc. are not 
meaningful, although certainly a structure can shift slightly from a true 
optimum (all gradients are essentially zero) with rounding.

On the other hand, not every file format supports arbitrary precision (e.g., 8 
decimals or more) - there's not much that babel can do about that, except by 
suggesting other formats with better suitability.

-Geoff

> On Sep 21, 2019, at 8:30 AM, Vaibhav Dixit <vaibhavadi...@gmail.com> wrote:
> I have had experience with reviewers questioning the interpretation of 
> coordinates beyond 2nd-decimal.
> Their argument was that coordinates from x-ray data are known with certainty 
> up to only the 2nd decimal place in Angstrom units.
> Thus any variation at or beyond the third decimal shouldn't be given 
> significant weight especially while claiming differences between bond 
> distance, angles and torsions etc.

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