Hi everyone,
I have a problem using Openbabel or Pybel in Python.
I am using Python3.6 and I installed `openbabel-2.4.1-cp36-cp36m-win32` from
http://www.lfd.uci.edu/~gohlke/pythonlibs<http://www.lfd.uci.edu/%7Egohlke/pythonlibs>
It says many formats missing. I read a similar thread about this when it was
advised not to install openbabel from the above link but instead from Python
PiP but the problem is that the Pip only had openbabel-2.4.1-cp35-cp35m-win32
at their website.
If I try to install it with pip, it gives the following error:
C:\>pip install openbabel
Collecting openbabel
Using cached openbabel-2.4.1.tar.gz
Installing collected packages: openbabel
Running setup.py install for openbabel ... error
Complete output from command
c:\users\malih\appdata\local\programs\python\python36-32\python.exe -u -c
"import setuptools,
tokenize;__file__='C:\\Users\\malih\\AppData\\Local\\Temp\\pip-build-lkj4qdt1\\openbabel\\setup.py';f=getattr(tokenize,
'open', open)(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" install --record
C:\Users\malih\AppData\Local\Temp\pip-tqavb9qy-record\install-record.txt
--single-version-externally-managed --compile:
running install
running build_ext
Warning: pkg-config could not be found.
Guessing Open Babel location:
- include_dirs:
['c:\\users\\malih\\appdata\\local\\programs\\python\\python36-32\\include',
'c:\\users\\malih\\appdata\\local\\programs\\python\\python36-32\\include',
'/usr/local/include/openbabel-2.0']
- library_dirs:
['c:\\users\\malih\\appdata\\local\\programs\\python\\python36-32\\libs',
'c:\\users\\malih\\appdata\\local\\programs\\python\\python36-32\\PCbuild\\win32',
'/usr/local/lib']
building '_openbabel' extension
swigging openbabel-python.i to openbabel-python_wrap.cpp
swig.exe -python -c++ -small -O -templatereduce -naturalvar
-Ic:\users\malih\appdata\local\programs\python\python36-32\include
-Ic:\users\malih\appdata\local\programs\python\python36-32\include
-I/usr/local/include/openbabel-2.0 -o openbabel-python_wrap.cpp
openbabel-python.i
Error: SWIG failed. Is Open Babel installed?
You may need to manually specify the location of Open Babel include and
library directories. For example:
python setup.py build_ext -I/usr/local/include/openbabel-2.0
-L/usr/local/lib
python setup.py install
----------------------------------------
Command "c:\users\malih\appdata\local\programs\python\python36-32\python.exe -u
-c "import setuptools,
tokenize;__file__='C:\\Users\\malih\\AppData\\Local\\Temp\\pip-build-lkj4qdt1\\openbabel\\setup.py';f=getattr(tokenize,
'open', open)(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" install --record
C:\Users\malih\AppData\Local\Temp\pip-tqavb9qy-record\install-record.txt
--single-version-externally-managed --compile" failed with error code 1 in
C:\Users\malih\AppData\Local\Temp\pip-build-lkj4qdt1\openbabel\
I don't know how to solve this issue. Please help me here as I need openbabel
to work for my research work.
Regards,
Muhammad Ali
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