Hello, Yes, I have tried that. I did it again , here are the error I get
$brew link open-babel Linking /usr/local/Cellar/open-babel/2.4.1... Error: Could not symlink bin/babel Target /usr/local/bin/babel already exists. You may want to remove it: rm '/usr/local/bin/babel' To force the link and overwrite all conflicting files: brew link --overwrite open-babel To list all files that would be deleted: brew link --overwrite --dry-run open-babel Then as you also said and it is mentioned above , I did the following $ brew link --overwrite open-babel Linking /usr/local/Cellar/open-babel/2.4.1... Error: Could not symlink include/inchi/inchi_api.h /usr/local/include/inchi is not writable. I thought maybe works for the second time :-D, so I restart the terminal and I did $ brew link --overwrite openbabel Error: No such keg: /usr/local/Cellar/openbabel Thanks and sorry for trouble Cheers, Mo On Tue, Nov 29, 2016 at 10:57 AM, Fredrik Wallner <fred...@wallner.nu> wrote: > The error message says that you should run "brew link open-babel". Have > you tried that? > > You probably have a problem with an old open-babel version in /use/local > why HomeBrew will fail on linking. > > Run brew doctor to see if it warns on stuff in /usr/local, especially if > there are stuff related to OpenBabel (e.g. libopenbabel, libinchi…) > > If ”brew link open-babel" fails you can also try with "brew link > --overwrite openbabel”. If that also fails, please provide the output of > that command. > > Kind regards, > Fredrik > > Skickat från min iPhone > > 29 nov. 2016 kl. 10:44 skrev Mohammad Goodarzi <mohammad.goda...@gmail.com > >: > > Hello Fredrik, > > Thanks , I have tried many things before I ask. I am not getting what I > really want. > > For example, I do have Homebrew 1.1.2 > > and when I simply run brew install open-babel , I am getting this > > You can link formula with `brew link open-babel` > Warning: open-babel-2.4.1 already installed, it's just not linked > > any idea where the problem is ? > > Cheers, > Mo > > On Tue, Nov 29, 2016 at 10:37 AM, Fredrik Wallner <fred...@wallner.nu> > wrote: > >> Hi, >> >> I would suggest you go with the HomeBrew option instead. >> If you don’t have HomeBrew installed, go to http://brew.sh >> Run the command from the installation instructions at openbabel.org ( >> http://openbabel.org/wiki/Category:Installation): brew install open-babel >> >> The error you are getting is because you are lacking cmake which is one >> of the requirements specified in the wiki for installing from the source >> code, but it is a lot easier to use the prebuilt versions form HomeBrew or >> Anaconda if you are not used to compiling stuff. >> >> Kind regards, >> Fredrik >> >> 29 nov. 2016 kl. 09:43 skrev Mohammad Goodarzi < >> mohammad.goda...@gmail.com>: >> >> Hello, >> >> I am trying to install open babel on a Mac machine version 10.12.1 >> >> I used the following to do it >> >> http://openbabel.org/wiki/Install_(source_code) >> >> Here the steps I am doing >> >> 1-First I download the latest version to desktop and set my directory in >> terminal to desktop >> 2- tar zxvf openbabel-2.4.1.tar >> 3-mv openbabel-2.4.1 ob-src >> 4-mkdir ob-build >> >> Now on desktop I have two folder one is ob-src and the other is ob-build >> >> >> 5-cd ob-build >> 6- cmake ../ob-src 2>&1 | tee cmake.out >> >> Then get error as follows: >> >> -bash: cmake: command not found >> >> when I do ls , there is nothing which is logical because I just created >> it myself >> >> >> Many thanks for your help >> Mo >> >> >> >> >> >> >> ------------------------------------------------------------ >> ------------------ >> _______________________________________________ >> OpenBabel-discuss mailing list >> OpenBabel-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >> >> >> >
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