The error message says that you should run "brew link open-babel". Have you tried that?
You probably have a problem with an old open-babel version in /use/local why HomeBrew will fail on linking. Run brew doctor to see if it warns on stuff in /usr/local, especially if there are stuff related to OpenBabel (e.g. libopenbabel, libinchi…) If ”brew link open-babel" fails you can also try with "brew link --overwrite openbabel”. If that also fails, please provide the output of that command. Kind regards, Fredrik Skickat från min iPhone 29 nov. 2016 kl. 10:44 skrev Mohammad Goodarzi <mohammad.goda...@gmail.com <mailto:mohammad.goda...@gmail.com>>: > Hello Fredrik, > > Thanks , I have tried many things before I ask. I am not getting what I > really want. > > For example, I do have Homebrew 1.1.2 > > and when I simply run brew install open-babel , I am getting this > > You can link formula with `brew link open-babel` > Warning: open-babel-2.4.1 already installed, it's just not linked > > any idea where the problem is ? > > Cheers, > Mo > > On Tue, Nov 29, 2016 at 10:37 AM, Fredrik Wallner <fred...@wallner.nu > <mailto:fred...@wallner.nu>> wrote: > Hi, > > I would suggest you go with the HomeBrew option instead. > If you don’t have HomeBrew installed, go to http://brew.sh <http://brew.sh/> > Run the command from the installation instructions at openbabel.org > <http://openbabel.org/> (http://openbabel.org/wiki/Category:Installation > <http://openbabel.org/wiki/Category:Installation>): brew install open-babel > > The error you are getting is because you are lacking cmake which is one of > the requirements specified in the wiki for installing from the source code, > but it is a lot easier to use the prebuilt versions form HomeBrew or Anaconda > if you are not used to compiling stuff. > > Kind regards, > Fredrik >> 29 nov. 2016 kl. 09:43 skrev Mohammad Goodarzi <mohammad.goda...@gmail.com >> <mailto:mohammad.goda...@gmail.com>>: >> >> Hello, >> >> I am trying to install open babel on a Mac machine version 10.12.1 >> >> I used the following to do it >> >> http://openbabel.org/wiki/Install_(source_code) >> <http://openbabel.org/wiki/Install_(source_code)> >> >> Here the steps I am doing >> >> 1-First I download the latest version to desktop and set my directory in >> terminal to desktop >> 2- tar zxvf openbabel-2.4.1.tar >> 3-mv openbabel-2.4.1 ob-src >> 4-mkdir ob-build >> >> Now on desktop I have two folder one is ob-src and the other is ob-build >> >> >> 5-cd ob-build >> 6- cmake ../ob-src 2>&1 | tee cmake.out >> >> Then get error as follows: >> >> -bash: cmake: command not found >> >> when I do ls , there is nothing which is logical because I just created it >> myself >> >> >> Many thanks for your help >> Mo >> >> >> >> >> >> >> ------------------------------------------------------------------------------ >> _______________________________________________ >> OpenBabel-discuss mailing list >> OpenBabel-discuss@lists.sourceforge.net >> <mailto:OpenBabel-discuss@lists.sourceforge.net> >> https://lists.sourceforge.net/lists/listinfo/openbabel-discuss >> <https://lists.sourceforge.net/lists/listinfo/openbabel-discuss> > >
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