You could also just copy mol2format.cpp from 2.3.1 and replace the one in
2.3.2.
On 10 December 2012 22:47, Manuel Melle Franco <manuelme...@gmail.com>wrote:
> thanks, I did need to use it so installed 2.3.1 just after I wrote to the
> list (and yes it also works for me).
>
> regards
>
> Manuel
> ____________________________________________________________
>
> Mohandas K. Gandhi often changed his mind publicly. An aide once asked
> him how he could so freely contradict this week what he had said just
> last week. The great man replied that it was because this week he knew
> better.
>
> ____________________________________________________________
>
> Manuel Melle-Franco, Ph.D.
> Investigador Auxiliar
> Centro de Ciências e Tecnologias de Computação, CCTC
> Universidade do Minho
> phone 00351-253604459
> Campus de Gualtar
> 4710-057 Braga
> PORTUGAL
> http://cctc.uminho.pt/portal_memberdata/manu
> http://www.researcherid.com/rid/D-3633-2011
> ---------------------------------------------------------
>
> A mind all logic is like a knife all blade. It makes the hand bleed that
> uses it.
> Rabindranath Tagore
>
> ---------------------------------------------------------
>
>
>
> On Fri, Dec 7, 2012 at 10:57 AM, Pascal Muller <pascal.jm.mul...@gmail.com
> > wrote:
>
>> Dear all,
>>
>> Will not help, but the conversion is fine with Open Babel 2.3.1, using
>> obabel or babel.
>> I should install 2.3.2... (the 2.3.2 release is not in the news box, by
>> the way).
>>
>> Regards,
>> Pascal
>>
>>
>>
>> 2012/12/6 Manuel Melle Franco <manuelme...@gmail.com>
>>
>>> Dear all,
>>>
>>> First thank you for your software and your effort, obabel is great!!!
>>>
>>> I just compiled the latest version of openbabel (2.3.2) in my ubuntu box
>>> and I get a segmentation fault when I try to read some molecules with N in
>>> mol2 format.
>>> It works fine for other formats but breaks with that.
>>>
>>> The output of gdb is:
>>>
>>> *Starting program: /usr/local/bin/babel mini2.mol2 mini2.xyz
>>>
>>> Program received signal SIGSEGV, Segmentation fault.
>>> 0x00002aaab040ab8a in OpenBabel::MOL2Format::ReadMolecule
>>> (this=<optimized out>, pOb=<optimized out>, pConv=<optimized out>)
>>> at
>>> /home/manu/bin/openbabel/openbabel-2.3.2/src/formats/mol2format.cpp:372
>>> 372 n_h_bonded++;
>>>
>>> *Find attached the file that gives trouble.
>>>
>>> thank you for your help, regards
>>>
>>> Manuel
>>>
>>> ____________________________________________________________
>>>
>>> Mohandas K. Gandhi often changed his mind publicly. An aide once asked
>>> him how he could so freely contradict this week what he had said just
>>> last week. The great man replied that it was because this week he knew
>>> better.
>>>
>>> ____________________________________________________________
>>>
>>> Manuel Melle-Franco, Ph.D.
>>> Investigador Auxiliar
>>> Centro de Ciências e Tecnologias de Computação, CCTC
>>> Universidade do Minho
>>> phone 00351-253604459
>>> Campus de Gualtar
>>> 4710-057 Braga
>>> PORTUGAL
>>> http://cctc.uminho.pt/portal_memberdata/manu
>>> http://www.researcherid.com/rid/D-3633-2011
>>> ---------------------------------------------------------
>>>
>>> A mind all logic is like a knife all blade. It makes the hand bleed that
>>> uses it.
>>> Rabindranath Tagore
>>>
>>> ---------------------------------------------------------
>>>
>>>
>>>
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>>
>>
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