Thank you Ernst-Georg a lot, great help. I am more aware now, and I code it.

Thanks a lot

Marianne

Le 16 déc. 2011 à 12:48, Ernst-Georg Schmid <ernst-georg.sch...@bayer.com> a 
écrit :

> Hi,
> 
> from the  finger2.cpp source:
> 
> For each of these fragments the atoms, bonding and whether
> they constitute a complete ring is recorded and saved in a std::set
> so that there is only one of each fragment type. Chemically identical 
> versions,
> i.e. ones with the atoms listed in reverse order and rings listed starting at
> different atoms, are identified and only a single canonical fragment is 
> retained.
> 
> "...so that there is only one of each fragment type..." -> FP2 does not 
> contain fragment counts.
> 
> But internally it should be possible to retain the counts you need, so you 
> should be able to write your own fingerprint based on the finger2.cpp source.
> 
> Best regards,
> 
> Ernst-Georg Schmid
> 

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