>You haven't said what you wanted the fingerprints for. They are a way of 
>recording the constituent parts of a molecule, and are
>less relevant for small molecules like those you mentioned. If you are 
>looking for a unique identifier for the molecule InChI, InChiKey or 
>canonical SMILES might be more useful. They can all be generated by 
>OpenBabel.

>Chris

Sir,
I need the fingerprints to calculate a similarity index between the
compounds.Can you suggest me what would be useful if not this?
Thank you.


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