Actually, I used WriteString() when I got that extra newline character:

my $inchi =  $obinchi->WriteString($obmol);

Igor

On Thu, 2011-09-15 at 10:18 -0400, Geoffrey Hutchison wrote:
> On Sep 15, 2011, at 8:33 AM, Noel O'Boyle wrote:
> 
> > I understand what you're saying, but that is on purpose. The library
> > API is geared towards converting files, rather than returning string
> > representations for further processing.
> 
> There is, of course OBConversion::WriteString(&mol, true), which trims any 
> final whitespace (including newlines):
> http://openbabel.org/api/2.3/classOpenBabel_1_1OBConversion.shtml#a18ce8681792d689dab8172a511c5a996
> 
> Cheers,
> -Geoff



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