Something's wrong with your Open Babel installation. To test your installation, don't run the three tests from C:\Program Files\OpenBabel-2.3.0, run them from C:\.
- Noel On 8 September 2011 20:27, coalmeister <josephjmcdon...@gmail.com> wrote: > after following instructions on: > http://openbabel.org/docs/2.3.0/UseTheLibrary/PythonInstall.html#windows > > Receive the following error running testscript. Assistance towards > resolution would be greatly appreciated. Would appear that error is > encountered in line 119 pybel.py (part of openbabel python bindings). > > c:\>c:\python25\python > Python 2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)] > on > win32 > Type "help", "copyright", "credits" or "license" for more information. >>>> import pybel >>>> mol = pybel.readstring("smi", "CC(=O)Br") > Traceback (most recent call last): > File "<stdin>", line 1, in <module> > File "C:\Python25\Lib\site-packages\pybel.py", line 119, in readstring > raise ValueError("%s is not a recognised OpenBabel format" % format) > ValueError: smi is not a recognised OpenBabel format > > I uninstalled 2.5 openbabel bindings, installed 2.7 bindings, ran python2.7, > same error. > > Following previous threads, uninstalled all bindings and openbabel 2.3.0, > re-installed openbabel and 2.7 bindings, same error. > > Previously, users with similar errors have been requested to report details > of installation. They are included below (newline whitespaces deleted): > > c:\Program Files\OpenBabel-2.3.0>babel -V > Open Babel 2.3.0 -- Nov 25 2010 -- 23:22:17 > > c:\Program Files\OpenBabel-2.3.0>babel -Hsdf > sdf MDL MOL format > Reads and writes V2000 and V3000 versions > Read Options, e.g. -as > s determine chirality from atom parity flags > This is valid only for 0D information. Atom > parity is always ignored on reading for MOL files > containing 2D or 3D information. > T read title only > P read title and properties only > When filtering an sdf file on title or properties > only, avoid lengthy chemical interpretation by > using the T or P option together with copy format. > Write Options, e.g. -x3 > 3 output V3000 not V2000 (used for >999 atoms/bonds) > m write no properties > w recalculate wedge and hash bonds(2D structures only) > A output in Alias form, e.g. Ph, if present > Specification at: http://www.mdl.com/downloads/public/ctfile/ctfile.jsp > > c:\Program Files\OpenBabel-2.3.0>dir "%BABEL_DATADIR%"\mr.txt > Volume in drive C is Windows7_OS > Volume Serial Number is D853-7305 > Directory of C:\Program Files\OpenBabel-2.3.0\data > 10/26/2010 12:37 PM 4,295 mr.txt > 1 File(s) 4,295 bytes > 0 Dir(s) 46,059,106,304 bytes free > > > > > -- > View this message in context: > http://forums.openbabel.org/problem-with-pybel-on-windows-7-tp3799822p3799822.html > Sent from the General discussion mailing list archive at Nabble.com. > > ------------------------------------------------------------------------------ > Why Cloud-Based Security and Archiving Make Sense > Osterman Research conducted this study that outlines how and why cloud > computing security and archiving is rapidly being adopted across the IT > space for its ease of implementation, lower cost, and increased > reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ > _______________________________________________ > OpenBabel-discuss mailing list > OpenBabel-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss > ------------------------------------------------------------------------------ Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
