after following instructions on:
http://openbabel.org/docs/2.3.0/UseTheLibrary/PythonInstall.html#windows
Receive the following error running testscript. Assistance towards
resolution would be greatly appreciated. Would appear that error is
encountered in line 119 pybel.py (part of openbabel python bindings).
c:\>c:\python25\python
Python 2.5.2 (r252:60911, Feb 21 2008, 13:11:45) [MSC v.1310 32 bit (Intel)]
on
win32
Type "help", "copyright", "credits" or "license" for more information.
>>> import pybel
>>> mol = pybel.readstring("smi", "CC(=O)Br")
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "C:\Python25\Lib\site-packages\pybel.py", line 119, in readstring
raise ValueError("%s is not a recognised OpenBabel format" % format)
ValueError: smi is not a recognised OpenBabel format
I uninstalled 2.5 openbabel bindings, installed 2.7 bindings, ran python2.7,
same error.
Following previous threads, uninstalled all bindings and openbabel 2.3.0,
re-installed openbabel and 2.7 bindings, same error.
Previously, users with similar errors have been requested to report details
of installation. They are included below (newline whitespaces deleted):
c:\Program Files\OpenBabel-2.3.0>babel -V
Open Babel 2.3.0 -- Nov 25 2010 -- 23:22:17
c:\Program Files\OpenBabel-2.3.0>babel -Hsdf
sdf MDL MOL format
Reads and writes V2000 and V3000 versions
Read Options, e.g. -as
s determine chirality from atom parity flags
This is valid only for 0D information. Atom
parity is always ignored on reading for MOL files
containing 2D or 3D information.
T read title only
P read title and properties only
When filtering an sdf file on title or properties
only, avoid lengthy chemical interpretation by
using the T or P option together with copy format.
Write Options, e.g. -x3
3 output V3000 not V2000 (used for >999 atoms/bonds)
m write no properties
w recalculate wedge and hash bonds(2D structures only)
A output in Alias form, e.g. Ph, if present
Specification at: http://www.mdl.com/downloads/public/ctfile/ctfile.jsp
c:\Program Files\OpenBabel-2.3.0>dir "%BABEL_DATADIR%"\mr.txt
Volume in drive C is Windows7_OS
Volume Serial Number is D853-7305
Directory of C:\Program Files\OpenBabel-2.3.0\data
10/26/2010 12:37 PM 4,295 mr.txt
1 File(s) 4,295 bytes
0 Dir(s) 46,059,106,304 bytes free
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