Based on Chris Morley's response to a previous question [1], I checked out the latest SVN build and tested it on this file. The files *does not* cause segfault with the latest checkout, so please ignore my question. It's already handled. Thank you!
[1] https://sourceforge.net/tracker/?func=detail&atid=428740&aid=3325452&group_id=40728 On Mon, Jun 27, 2011 at 8:02 PM, A. Heifets <a...@cs.toronto.edu> wrote: > Any obvious idea why the following file causes a segfault with "obabel > -isdf junk.sdf -osdf -Ofoo.sdf"? It's something to do with the R > groups because, if I replace them with 'C', the file works. Is there > a way to skip generating output instead of making OpenBabel segfault? > > OpenBabel06261100152D > > 13 8 0 0 0 0 0 0 0 0999 V2000 > 3.6440 1.8715 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 3.1123 3.5077 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 1.3919 3.5077 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 0.8602 1.8715 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 2.2521 0.8602 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 7.0849 0.8602 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 5.3644 0.8602 0.0000 * 0 0 0 0 0 0 0 0 0 0 0 0 > 1.2717 -82.4145 0.0000 * 0 0 0 0 0 0 0 0 0 0 0 0 > 8.8849 0.8602 0.0000 * 0 0 0 0 0 0 0 0 0 0 0 0 > 10.0278 5.2282 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 10.0278 5.2282 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 7.1645 5.2282 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 5.4440 5.2282 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0 > 1 2 1 0 0 0 0 > 1 5 1 0 0 0 0 > 2 3 1 0 0 0 0 > 3 4 1 0 0 0 0 > 4 5 1 0 0 0 0 > 6 7 1 0 0 0 0 > 10 11 1 0 0 0 0 > 12 13 1 0 0 0 0 > A 7 > R > A 8 > R > A 9 > R > M END > > $$$$ > > > -- > A. Heifets > http://www.cs.toronto.edu/~aheifets/ > -- A. Heifets http://www.cs.toronto.edu/~aheifets/ ------------------------------------------------------------------------------ All of the data generated in your IT infrastructure is seriously valuable. Why? It contains a definitive record of application performance, security threats, fraudulent activity, and more. Splunk takes this data and makes sense of it. IT sense. And common sense. http://p.sf.net/sfu/splunk-d2d-c2 _______________________________________________ OpenBabel-discuss mailing list OpenBabel-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
