Any obvious idea why the following file causes a segfault with "obabel
-isdf junk.sdf -osdf -Ofoo.sdf"? It's something to do with the R
groups because, if I replace them with 'C', the file works. Is there
a way to skip generating output instead of making OpenBabel segfault?
OpenBabel06261100152D
13 8 0 0 0 0 0 0 0 0999 V2000
3.6440 1.8715 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
3.1123 3.5077 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
1.3919 3.5077 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
0.8602 1.8715 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
2.2521 0.8602 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
7.0849 0.8602 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
5.3644 0.8602 0.0000 * 0 0 0 0 0 0 0 0 0 0 0 0
1.2717 -82.4145 0.0000 * 0 0 0 0 0 0 0 0 0 0 0 0
8.8849 0.8602 0.0000 * 0 0 0 0 0 0 0 0 0 0 0 0
10.0278 5.2282 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
10.0278 5.2282 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
7.1645 5.2282 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
5.4440 5.2282 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
1 5 1 0 0 0 0
2 3 1 0 0 0 0
3 4 1 0 0 0 0
4 5 1 0 0 0 0
6 7 1 0 0 0 0
10 11 1 0 0 0 0
12 13 1 0 0 0 0
A 7
R
A 8
R
A 9
R
M END
$$$$
--
A. Heifets
http://www.cs.toronto.edu/~aheifets/
------------------------------------------------------------------------------
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