Dear Shirley, If you have access in your group* to the Connect module of Phoenix you will find that NONMEM jobs executed via this interface will automatically extract certain information including these as tables for use in other 'downstream' objects in your workflow which could include R. It also supports PsN, Xpose, SAS, SigmaPlot and S-plus.
There are some webinars (e.g. http://www.pharsight.com/events/eventsonline_archive.php#replay_049) that can expand on my comments if you are interested and an example project in the User Forum. Best regards, Simon. *I know your organisation already has some float licenses for this. Alterantively we could set you up with an evaluation license. ___________________________________ simon.da...@certara.com<mailto:simon.da...@certara.com> Senior Scientific Consultant Pharsight- A Certara(tm) Company Get tips and discuss Pharsight products with other users; www.pharsight.com/extranet ___________________________________ http://www.pharsight.com/training/training_upcoming.php Satellite workshops at PAGE, 5 June 2012, Venice, Italy. 08:30 - 12:30 "Phoenix Connect: Linking Modeling and Simulation Tools, including NONMEM, R, Xpose & PsN, in Phoenix Workflows" register<https://pharsight.securesites.com/training/course_display_new.php?details_id=98>. 13:00 - 17:00 "An Overview of the QRPEM Algorithm in Phoenix NLME" details<https://pharsight.securesites.com/training/course_display_new.php?details_id=99>. Introduction to Phoenix WinNonlin 25-27 Sep. 2012 Amsterdam, The Netherlands Population Modeling Methodology using Phoenix NLME 2-4 Oct. 2012 Paris, France Introduction to Phoenix WinNonlin 4-6 Dec. 2012 London, UK From: owner-nmus...@globomaxnm.com [mailto:owner-nmus...@globomaxnm.com] On Behalf Of Hou, Xiaoli Shirley Sent: Sunday, September 02, 2012 10:50 PM To: NONMEM Subject: RE: [NMusers] single-patient AUC Dear NM-Users, I am doing a simulation using R, in which the within and between subject variations, "EPSILON" and "OMEGA", are needed. They are automatically listed in the ***.lst file of the NONMEM outputs. Is there a way I can read them from my NONMEM output into R? Thanks, Shirley Dr. Xiaoli Shirley Hou Senior Biometrician, ECDS 351 N. Sumneytown Pike, UG1C36 North Wales, PA. 19454. Phone (540) 381-9599 Fax (267) 305-6395 VoiceMailBox (800) 737-2088 ext 68134 Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (One Merck Drive, Whitehouse Station, New Jersey, USA 08889), and/or its affiliates Direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system. _________________________________________________________________ NOTICE: The information contained in this electronic mail message is intended only for the personal and confidential use of the designated recipient(s) named above. This message may be an attorney-client communication, may be protected by the work product doctrine, and may be subject to a protective order. As such, this message is privileged and confidential. If the reader of this message is not the intended recipient or an agent responsible for delivering it to the intended recipient, you are hereby notified that you have received this message in error and that any review, dissemination, distribution, or copying of this message is strictly prohibited. If you have received this communication in error, please notify us immediately by telephone and e-mail and destroy any and all copies of this message in your possession (whether hard copies or electronically stored copies). Thank you.
