Thanks, Stefano. Here again what I followed up or tried:
1) Put the file biblatex.module in the layouts folder
I guess the /.lyx/layouts/ is meant ?
or is it documents>module>Biblatex-citation-styles
I have selected this and added to 'chosen' in right box
or both, which I tried ??
2) tools>reconfigure
restart lyx
3) documents>Settings>Bibliography
citation style: standard
Processor: biber
3) preamble>
\usepackage[style=authoryear,natbib=true]{biblatex}
\addbibresource{<name of bib-file with .bib-extension>}
in my case \addbibresource{PBRef.bib}
tried also
\addbibresource{/home/we/Photobiology2013/PBRFigFinal/PBRef.bib}
4) Insert>List/TOC>BibTeX Bibliography...
in my case PBRef
style: plain
and put it in LyX note (turns yellow)
5) \printbibliography in ERT
inserted after the yellow BibTeX Bibliography note
6) Tools>Settings>Output>LaTeX
processor: biber
I did all this including reconfigure, the terminal says
Running: biber "PB-Biber"
INFO - This is Biber 1.6
INFO - Logfile is 'PB-Biber.blg'
INFO - Reading 'PB-Biber.bcf'
INFO - Found 748 citekeys in bib section 0
INFO - Processing section 0
INFO - Looking for bibtex format file
'/home/WE/Photobiology2013/PBRFigFinal/PBRef.bib' for section 0
ERROR - Cannot find '/home/WE/Photobiology2013/PBRFigFinal/PBRef.bib'!
INFO - ERRORS: 1
support/Systemcall.cpp (273): Systemcall: 'biber "PB-Biber"' finished with
exit code 2
However, the PBRef.bib is there:
> so you can make up your own command by typing the following
> at a prompt, to get the complete path of file "myfilename.bib"
>
> $>ls $PWD/myfilename.bib
Dolphin tells me:
/home/we/Photobiology2013/PBRFigFinal
and your proposal:
we@wolfgang:~/Photobiology2013/PBRFigFinal$ $ls $PWD/PBRef.bib
bash: /home/we/Photobiology2013/PBRFigFinal/PBRef.bib: Keine Berechtigung
(no admission)
I changed the permission to include group, but still no change in output
>
> Ok, this is confusing. Are you getting the references in your pdf files?
> If so, it means that biber has found your bib file and has processed it
> correctly. If you are not getting the "References" section at the end,
> however, you may have forgotten and/or mispelled the /printbibliography
> command. Or latex may have choked on it due to some error in the bbl
> file.
>
> Can you confirm that:
>
> 1. You are getting the correct citations in the pdf file
yes, I do
> 2. You have entered \printbibliography in ERT at the end of your
> document
yes, I did
> 3. You do not see a corresponding "References" or "Works
> cited" section with your full references at the end of your pdf file
No, I don't
I should perhaps add, that I use Koma script (book)
I tried with the normal book style,
but get an error
Der Absatzstil `Publishers' wurde nicht gefunden.
(paragraph style `Publishers' was not found
The same with other book styles except Koma
I have taken out all entrances in the preamble except
\usepackage[style=authoryear,natbib=true,backend=biber]{biblatex}
%could also be
% \usepackage[style=authoryear,natbib=true]{biblatex}
\addbibresource{/home/WE/Photobiology2013/PBRFigFinal/PBRef.bib}
but still no Bibliography output in the pdf
although the references are cited in the pdf output
I tried furthermore ps output, same problem: citations alright, but no
Bibliography output.
I tried also a (almost) minimal example with no success either.
May I include this example and the bib file going with it? It is quite short
and might help you in finding out what I do wrong.
Thanks for all the help for and patience with me
Wolfgang
% This file was created with JabRef 2.7b.
% Encoding: ISO8859_1
@ARTICLE{Hennessey1991,
author = {Hennessey, T. L. and Field, C. B.},
title = {Circadian rhythms in photosynthesis},
journal = {Plant Physiol},
year = {1991},
volume = {96},
pages = {831--836},
owner = {wolfgang},
timestamp = {2012.02.25}
}
@comment{jabref-meta: selector_publisher:}
@comment{jabref-meta: selector_author:}
@comment{jabref-meta: selector_journal:}
@comment{jabref-meta: selector_keywords:}
PB-BiberXX.lyx
Description: application/lyx
